All Publications

Title Author Year Publication type
Generation of guideline-based clinical decision trees in oncology using large language models Brenda Y. Miao; Eduardo Rodriguez Almaraz; Amir Ashraf Ganjouei; Arvind Suresh; Travis Zack; Maxim Bravo; Boris Oskotsky; Ahmed Alaa; Atul J. Butte 2024 Preprint
EEG-GPT: Exploring Capabilities of Large Language Models for EEG Classification and Interpretation Jonathan W Kim; Ahmed Alaa; Danilo Bernardo 2024 Preprint
Generating new drug repurposing hypotheses using disease-specific hypergraphs Ayush Jain; Marie Charpignon; Irene Y. Chen; Anthony Philippakis; Ahmed Alaa 2024 Pacific Symposium on Biocomputing (PSB)
Diffinfinite: Large mask-image synthesis via parallel random patch diffusion in histopathology Marco Aversa; Gabriel Nobis; Miriam Hägele; Kai Standvoss; Mihaela Chirica; Roderick Murray-Smith; Ahmed Alaa; Lukas Ruff; Daniela Ivanova; Wojciech Samek; Frederick Klauschen; Bruno Sanguinetti; Luis Oala 2024 NeurIPS
Aligning synthetic medical images with clinical knowledge using human feedback Shenghuan Sun; Gregory M. Goldgof; Atul J. Butte; Ahmed Alaa 2024 NeurIPS
Conformal meta-learners for predictive inference of individual treatment effects Ahmed Alaa; Zaid Ahmad; Mark van der Laan 2024 NeurIPS
Estimating Uncertainty in Multimodal Foundation Models using Public Internet Data Shiladitya Dutta; Hongbo Wei; Lars van der Laan; Ahmed Alaa 2023 NeurIPS R0-FoMo Workshop
Large-Scale Study of Temporal Shift in Health Insurance Claims Christina X Ji; Ahmed Alaa; David Sontag 2023 CHIL
Conformalized Unconditional Quantile Regression Ahmed Alaa; Zeshan Hussain; David Sontag 2023 AISTATS
PREDICT underestimates survival of patients with HER2-positive early-stage breast cancer Ahmed Alaa; Adrian L Harris; Mihaela van der Schaar 2023 npj Breast Cancer
External validity of machine learning-based prognostic scores for cystic fibrosis: a retrospective study using the UK and Canadian registries Yuchao Qin; Ahmed Alaa; Andres Floto; Mihaela van der Schaar 2023 PLOS Digital Health
Mining for informative signals in biological sequences Ahmed Alaa 2022 Nature Machine Intelligence
ETAB: A Benchmark Suite for Visual Representation Learning in Echocardiography Ahmed Alaa; Anthony Philippakis; David Sontag 2022 NeurIPS
How faithful is your synthetic data? sample-level metrics for evaluating and auditing generative models Ahmed Alaa; Boris van Breugel; Evgeny Saveliev; Mihaela van der Schaar 2022 ICML
Machine learning to guide the use of adjuvant therapies for breast cancer Ahmed Alaa; Deepti Gurdasani; Adrian L Harris; Jem Rashbass; Mihaela van der Schaar 2021 Nature Machine Intelligence

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